Showing : illimina 450k methylation • reset
9
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Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
illimina 450k methylation qsea MEDIPS TCGA
updated 12 months ago by ▴ 280 • written 7.8 years ago by ▴ 20
1
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3
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2.0k
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Merge column to SummarizedExperiment from other dataframe
summarizedexperiment rangedsummarizedexperiment illimina 450k methylation
6.3 years ago s.w.vanderlaan ▴ 30
0
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5
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2.6k
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DNA methylation analysis without raw data IDAT files
r illimina 450k methylation minfi champ tcga
updated 6.4 years ago by ▴ 290 • written 6.4 years ago by ▴ 60
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1
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1.8k
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Error in Rnbeads:Error in logger.error(em) : Could not create file. cannot popen '/usr/bin/which 'gs' 2>/dev/null', probable reason 'Cannot alloca…
R bioconductor rnbeads microarray illimina 450k methylation
7.2 years ago preethibagopi28 ▴ 10
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1
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2.0k
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Beta Value Analysis - DNA Methylation Dataset
dna methylation illimina 450k methylation beta M significance
updated 7.3 years ago by 67k • written 7.3 years ago by • 0
0
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0
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1.4k
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Error when using Champ.SVD() function
champ champs.svd() 450K illimina 450k methylation champ 2.8.9
7.3 years ago david.ch • 0
0
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0
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1.5k
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how to use Methylumi background correction (noob) in CHAMP
Methylumi NOOB CHAMP Background corection illimina 450k methylation
7.8 years ago rahel14350 ▴ 10
0
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1
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1.9k
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Epigenetic clock (Horvath): package?
methylation illimina 450k methylation epigenetics minfi
updated 7.9 years ago by ▴ 60 • written 8.0 years ago by ▴ 120
0
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1
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1.1k
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effective tools, methylation data
illimina 450k methylation bioconductor
updated 8.0 years ago by 67k • written 8.0 years ago by • 0
0
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0
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1.0k
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Problem annotating with COHCAP 1.16.0 in MacOsX
illimina 450k methylation RNA-seq COHCAP
8.1 years ago IOM ▴ 20
0
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0
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902
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Replicates need for methylation analysis using minfi
minfi methylation illimina 450k methylation
8.3 years ago arisarkar88 ▴ 40
4
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3
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2.1k
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Discrepanices between minifi dmp finder and lmfit
illimina 450k methylation minfi limma
8.5 years ago Andreas Paul • 0
0
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2
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1.2k
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Common probes between 27K and 450 chip
illimina 450k methylation
8.5 years ago Adrian Johnson ▴ 330
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2
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2.3k
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Further analysis of methylation microarrays data (Illumina - idat) after reading by illuminaio package
limma lumi illuminaio illimina 450k methylation microarray
8.8 years ago Adam • 0
0
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4
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1.8k
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minfi sample limit
minfi illumina illimina 450k methylation methylation
updated 8.8 years ago by ★ 6.5k • written 8.8 years ago by ▴ 50
0
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2
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2.1k
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RnBeads - error with 'rnb.run.differential' module
RnBeads illimina 450k methylation
9.2 years ago Brian Smith ▴ 120
1
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13
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2.5k
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MethylAid package visualize function not opening a web browser
illimina 450k methylation methyanalysis methylaid
9.3 years ago jdangelo • 0
2
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2
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2.9k
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Illumina 450k Annotation Definitions/Articles: How was "Enhancer" status determined?
probe annotation illimina 450k methylation minfi methylation
9.5 years ago metamaden ▴ 10
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3
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3.5k
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DMRcate: incorporating covariates to find DMRs in methylation data?
limma illimina 450k methylation DMRcate
updated 9.8 years ago by ▴ 200 • written 9.8 years ago by ▴ 120
19 results • Page 1 of 1
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Comment: Problems with oarfish + tximport + swish by Michael Love 43k
Great thanks for posting the issue and sticking with it Annaleigh
Comment: Problems with oarfish + tximport + swish by brown.annaleigh • 0
Awesome possum! Update works!! Thank you so much for the help and guidance!
Comment: Postdoctoral Researcher in Spatial Gene Regulatory Networks underlying Stomatal by iqratechnology4 • 0
Iqra Technology is IT Solutions and Services Company. We are salesforce and Microsoft partner company. https://iqratechnology.com/
Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt? by James W. MacDonald 67k
> BTW, shouldn't you be using keep.lib.sizes = F and re-do the calcNormFactors() after filtering of the dglst low-expression ENSGs, as Gord…
Comment: Problems with oarfish + tximport + swish by Michael Love 43k
Let me see if I can add some code to tximeta to cover this case. I've added an argument `skipRanges` in devel branch which should allow: …
Votes
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Answer: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
Answer: Limma Interaction Effect with Covariates
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