Showing : illimina 450k methylation • reset
9
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Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
illimina 450k methylation qsea MEDIPS TCGA
updated 2.0 years ago by ▴ 280 • written 8.8 years ago by ▴ 20
1
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3
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2.4k
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Merge column to SummarizedExperiment from other dataframe
summarizedexperiment rangedsummarizedexperiment illimina 450k methylation
7.2 years ago s.w.vanderlaan ▴ 30
0
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5
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3.1k
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DNA methylation analysis without raw data IDAT files
r illimina 450k methylation minfi champ tcga
updated 7.4 years ago by ▴ 290 • written 7.4 years ago by ▴ 60
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1
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Error in Rnbeads:Error in logger.error(em) : Could not create file. cannot popen '/usr/bin/which 'gs' 2>/dev/null', probable reason 'Cannot alloca…
R bioconductor rnbeads microarray illimina 450k methylation
8.2 years ago preethibagopi28 ▴ 10
1
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1
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2.5k
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Beta Value Analysis - DNA Methylation Dataset
dna methylation illimina 450k methylation beta M significance
updated 8.3 years ago by 68k • written 8.3 years ago by • 0
0
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0
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1.6k
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Error when using Champ.SVD() function
champ champs.svd() 450K illimina 450k methylation champ 2.8.9
8.3 years ago david.ch • 0
0
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0
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1.7k
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how to use Methylumi background correction (noob) in CHAMP
Methylumi NOOB CHAMP Background corection illimina 450k methylation
8.8 years ago rahel14350 ▴ 10
0
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1
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2.3k
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Epigenetic clock (Horvath): package?
methylation illimina 450k methylation epigenetics minfi
updated 8.8 years ago by ▴ 60 • written 9.0 years ago by ▴ 120
0
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1
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1.3k
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effective tools, methylation data
illimina 450k methylation bioconductor
updated 8.9 years ago by 68k • written 8.9 years ago by • 0
0
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0
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1.2k
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Problem annotating with COHCAP 1.16.0 in MacOsX
illimina 450k methylation RNA-seq COHCAP
9.0 years ago IOM ▴ 20
0
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0
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1.0k
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Replicates need for methylation analysis using minfi
minfi methylation illimina 450k methylation
9.3 years ago arisarkar88 ▴ 40
4
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3
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2.4k
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Discrepanices between minifi dmp finder and lmfit
illimina 450k methylation minfi limma
9.5 years ago Andreas Paul • 0
0
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2
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1.4k
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Common probes between 27K and 450 chip
illimina 450k methylation
9.5 years ago Adrian Johnson ▴ 330
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2
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2.6k
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Further analysis of methylation microarrays data (Illumina - idat) after reading by illuminaio package
limma lumi illuminaio illimina 450k methylation microarray
9.8 years ago Adam • 0
0
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4
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2.1k
views
minfi sample limit
minfi illumina illimina 450k methylation methylation
updated 9.8 years ago by ★ 6.5k • written 9.8 years ago by ▴ 50
0
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2
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2.4k
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RnBeads - error with 'rnb.run.differential' module
RnBeads illimina 450k methylation
10.2 years ago Brian Smith ▴ 120
1
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13
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3.2k
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MethylAid package visualize function not opening a web browser
illimina 450k methylation methyanalysis methylaid
10.3 years ago jdangelo • 0
2
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2
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3.3k
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Illumina 450k Annotation Definitions/Articles: How was "Enhancer" status determined?
probe annotation illimina 450k methylation minfi methylation
10.5 years ago metamaden ▴ 10
0
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3
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3.9k
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DMRcate: incorporating covariates to find DMRs in methylation data?
limma illimina 450k methylation DMRcate
updated 10.8 years ago by ▴ 230 • written 10.8 years ago by ▴ 120
19 results • Page 1 of 1
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Comment: Incosistencies in buildSNNGraph() function by ATpoint ★ 5.0k
Just played with this a bit and I think it comes down to not having a fixed seed before running the leiden thingy. Same goes for PCA and UM…
Answer: Incosistencies in buildSNNGraph() function by Aaron Lun ★ 29k
The most obvious thing that comes to mind is the RNG seed. `cluster_leiden()` does some random number generation, somewhere deep in the **i…
Comment: Opportunity to host EuroBioC2026 Preconference workshops! by TikTsokaas33ocissalpc • 0
Thank you for sharing the EuroBioC2026 workshop opportunity. I m interested in hosting a hands on session teaching reproducible data analys…
Comment: Ensembl plants at annotationHub? by jwp48 • 0
Nope I don't mind haha! Anyway thanks so much! Thats super kind of you!
Answer: Combining two proteomics datasets with limpa by Gordon Smyth 53k
Hi Andrew, We don't have that much experience combining different datasets with limpa yet, but my feeling is that the same DPC should be u…
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Answer: Incosistencies in buildSNNGraph() function
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Bioconductor Maintainer Application
A: What is logFC and "B" in methylation analysis ??
limma moderated t-statistics and B-statistics
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