Showing : illimina 450k methylation • reset
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Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
illimina 450k methylation qsea MEDIPS TCGA
updated 21 months ago by ▴ 280 • written 8.5 years ago by ▴ 20
1
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3
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2.3k
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Merge column to SummarizedExperiment from other dataframe
summarizedexperiment rangedsummarizedexperiment illimina 450k methylation
7.0 years ago s.w.vanderlaan ▴ 30
0
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5
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3.0k
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DNA methylation analysis without raw data IDAT files
r illimina 450k methylation minfi champ tcga
updated 7.1 years ago by ▴ 290 • written 7.1 years ago by ▴ 60
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1
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Error in Rnbeads:Error in logger.error(em) : Could not create file. cannot popen '/usr/bin/which 'gs' 2>/dev/null', probable reason 'Cannot alloca…
R bioconductor rnbeads microarray illimina 450k methylation
7.9 years ago preethibagopi28 ▴ 10
1
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1
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2.4k
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Beta Value Analysis - DNA Methylation Dataset
dna methylation illimina 450k methylation beta M significance
updated 8.1 years ago by 68k • written 8.1 years ago by • 0
0
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0
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1.5k
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Error when using Champ.SVD() function
champ champs.svd() 450K illimina 450k methylation champ 2.8.9
8.1 years ago david.ch • 0
0
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0
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1.6k
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how to use Methylumi background correction (noob) in CHAMP
Methylumi NOOB CHAMP Background corection illimina 450k methylation
8.5 years ago rahel14350 ▴ 10
0
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1
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2.2k
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Epigenetic clock (Horvath): package?
methylation illimina 450k methylation epigenetics minfi
updated 8.6 years ago by ▴ 60 • written 8.7 years ago by ▴ 120
0
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1
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1.3k
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effective tools, methylation data
illimina 450k methylation bioconductor
updated 8.7 years ago by 68k • written 8.7 years ago by • 0
0
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0
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1.1k
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Problem annotating with COHCAP 1.16.0 in MacOsX
illimina 450k methylation RNA-seq COHCAP
8.8 years ago IOM ▴ 20
0
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0
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988
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Replicates need for methylation analysis using minfi
minfi methylation illimina 450k methylation
9.1 years ago arisarkar88 ▴ 40
4
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3
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2.3k
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Discrepanices between minifi dmp finder and lmfit
illimina 450k methylation minfi limma
9.2 years ago Andreas Paul • 0
0
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2
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1.3k
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Common probes between 27K and 450 chip
illimina 450k methylation
9.3 years ago Adrian Johnson ▴ 330
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2
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Further analysis of methylation microarrays data (Illumina - idat) after reading by illuminaio package
limma lumi illuminaio illimina 450k methylation microarray
9.5 years ago Adam • 0
0
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4
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2.0k
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minfi sample limit
minfi illumina illimina 450k methylation methylation
updated 9.6 years ago by ★ 6.5k • written 9.6 years ago by ▴ 50
0
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2
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2.3k
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RnBeads - error with 'rnb.run.differential' module
RnBeads illimina 450k methylation
9.9 years ago Brian Smith ▴ 120
1
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13
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3.0k
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MethylAid package visualize function not opening a web browser
illimina 450k methylation methyanalysis methylaid
10.0 years ago jdangelo • 0
2
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2
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3.2k
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Illumina 450k Annotation Definitions/Articles: How was "Enhancer" status determined?
probe annotation illimina 450k methylation minfi methylation
10.3 years ago metamaden ▴ 10
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3
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DMRcate: incorporating covariates to find DMRs in methylation data?
limma illimina 450k methylation DMRcate
updated 10.5 years ago by ▴ 230 • written 10.5 years ago by ▴ 120
19 results • Page 1 of 1
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Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by ubjw24 • 0
Thank you for your replies. I got the problem solved by installing mutSignature with this line: ``` devtools::install_github("dami82/mutS…
Comment: DESeq2 design for haplotype MPRA by Rita • 0
Thank you very much, I appreciate it!
Answer: DESeq2 design for haplotype MPRA by Michael Love 43k
> My goal is to identify which non-reference haplotypes are differentially active compared to the corresponding ref/ref haplotype within ea…
Answer: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by James W. MacDonald 68k
It seems fine on devel as well. ``` > BSgenome.Hsapiens.UCSC.hg38 | BSgenome object for Human | - organism: Homo sapiens | - provide…
Comment: "organism" missing in BSgenome.Hsapiens.UCSC.hg38 slotNames by James W. MacDonald 68k
R-4.5.1 is compatible with both release and devel versions of Bioconductor. Which one are you using? I am still on release, and it's fine: …
Votes
Comment: Check removeBatchEffect effectiveness
Comment: Streamlining the computing time for MiloDE p-value correction in large dataset?
Answer: DESeq2 design for haplotype MPRA
A: Different logFC (log2foldchange) values for genes from limma-voom and other too
Comment: Check removeBatchEffect effectiveness
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